Publications 2013

Below you will find links to the publications from the year 2013 which describe research financed by the BLUEPRINT project.
 

   PLoS One
   December 2013
 		BMC Genomics
December 2013		 
   HDAC Inhibitors repress
   BARD1 isoform expression
   in acute myeloid leukemia…

 		Divergent transcription
is associated with
promoters of …		 
   Epigenetics 
   November 2013
 		  BMC Bioinformatics
  December 2013		PLoS Genetics
December 2013
   Integrated analysis of
   genome-wide genetic and
   epigenetic association data…
 		  Marmal-aid – a database
  for Infinium Human
  Methylation450.		Transcription factor
occupancy mediates active
turnover of DNA methylation…
   Genome Biol
   October 2013		Biochim Biophys Acta
November 2013
Leukemia
November 2013
 
   A screen for hydroxymethyl-
   cytosine and formylcytosine
   binding proteins suggest
 		Intragenic DNA methylation
in transcriptional regulation,
normal differentiation and….
NPMc+ and FLT3_ITD
mutations cooperate in
inducing acute leukeamia in …
   Haematologica
   October 2013
 		Nat Protoc
October 2013
 		Cell Stem Cell
October 2013
 
   BLUEPRINT: mapping human
   blood cell epigenomes.		Oxidative bisulfite
sequencing of 5-methyl-
cytosine and 5-hydroxy…
 		Dynamic analysis of gene
expression and genome-
wide transcription factor…
 
   PLoS Comput Biol
   September 2013		Cell Stem Cell
September 2013
 		Cell Stem Cell
September 2013
 
   Associations among histone
   modifications using spars
   partial correlation networks.

 		FGF signaling inhibition
in ESCs drives rapid
genome-wide demethylation..
 		Whole-genome bisulfite
sequencing of two distinct
interconvertible DNA …
 
   Methods
   September 2013
 		Genome Res
September 2013		Stem Cells Dev
September 2013
   An update on recent methods
   applied for deciphering the
   diversity of the non-coding…
 		DNA methylation
contributes to natural
human variation.		MePR: a novel human
mesenchymal progenitor
model with characteristics...
 
   Epigenetics
   August 2013
 		Epigenetics
August 2013		Blood Cancer J
September 2013
   DNA methylation analysis
   of murine hematopoietic
   side population cells…
 		Report of the 2nd annual
Infinium human methylation
450k array workshop.
 		Acute promyelocytic
leukemias share cooperative
dmutations with other…
 
   Frontiers in Oncology
   July 2013
 		Nat Commun
July 2013
 		Biology Open
August 2013
 
   Is PML a tumor suppressor?
 		Meta-analysis of ID-mutant
cancers identifies EBF1 as
an interation partner of …
 		The class I-specific HDAC
inhibitor MS-275 modulates
the differential potential….
   Bioinformatics
   July 2013
  		Curr Opin Hematol
July 2013		Genome Research
July 2013
 
   RUbioSeq: a suite of
   parallelized pipelines to
   automate exome variation…
 		Genetic and epigenetic
basis of chronic lymph-
ocytic leukemia.		Maps of open chromatin
highlight cell type-specific
patterns of regulatory …
   ChemmedChem 
   May 2013
 		  Genome Biol
  May 2013		Nat Rev Genet
June 2013
 
   tert-Butylcarbamate-con
   taining histone deacetylase
   inhibitors: apoptosis…
 		  Inactive or moderately
  active human promotors
  are enriched for inter...		Exploring the three-
dimensional organisation
of genomes: interpreting…
 
   Blood
   April 2013
 		  Cell Prolif
  April 2013
 		Nat Genet
May 2013
 
   A dual role for Hdac1:
   oncosuppressor in
   tumorigenesis, oncogene …		  Genista sessilifolia DC
  extracts induce apopotosis
  across a range of …
SMIM1 underlies the Vel
blood group and influences
red blood cell traits.
 
   Genome Medicine
   February 2013
 		 Bioinformatics
 March 2013
Epigenetics
March 2013
   Identification and functional
   validation of HPV-mediated
   hypermethylation in…
 		 Grape RNA-Seq analysis
 pipeline environment.
Buccals are likely to be a
more informatice surrogate
tissue than blood for...
 
   Bioinformatics
   January 2013
 		  Genome Research
  January 2013		Biochim Biophys Acta
January 2013
   A beta-mixture quantile
   normalization method
   for correcting probe…
 		  Genome-wide mapping of
  human DNA-replication
  origins: levels of transcrip…
 		The DNA methylation agent
decitabine activates the
TRAIL pathway and induces...
 
   Nucleic Acids Res
   January 2013
 		  Nucleic Acids Res
  January 2013		  Nucleic Acids Res
  January 2013
   Ensembl 2013  APPRIS: annotation of
  principal and alternative
  splice isoforms		  ChiTaRS: a database of
  human, mouse and fruit fly
  chimeric transcripts …
 
 
  
  Ann Neurol
  January 2013		  Epigenetics
  January 2013
  
 
 		  Ischemic stroke is
  associated with the ABO
  locus: the EuroCLOT study		  Aberrant DNA methylation
  profiles in the premature
  aging disorders …